| MirGeneDB ID | Dre-Mir-187 |
|---|
| Family name |
MIR-187 (all species) |
|---|
| Seed |
CGUGUCU |
|---|
| Species |
Zebrafish (Danio rerio) |
|---|
| MiRBase ID |
dre-mir-187
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aca-Mir-187
Ami-Mir-187
Bta-Mir-187
Cfa-Mir-187
Cli-Mir-187
Cpi-Mir-187
Cpo-Mir-187
Dno-Mir-187
Ete-Mir-187
Gga-Mir-187
Gja-Mir-187
Gmo-Mir-187
Hsa-Mir-187
Lch-Mir-187
Loc-Mir-187
Mal-Mir-187
Mdo-Mir-187
Mml-Mir-187
Mmu-Mir-187
Mun-Mir-187
Oan-Mir-187
Ocu-Mir-187
Rno-Mir-187
Sha-Mir-187
Spt-Mir-187
Tgu-Mir-187
Tni-Mir-187
Xtr-Mir-187
|
|---|
| Node of Origin (locus) |
Osteichthyes
|
|---|
| Node of Origin (family) |
Osteichthyes
|
|---|
Genome context
(danRer11) |
chr19: 34135627-34135688 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAGACGAAGGUGACCUGUGGCUGGGCCAGGGGCUGCAACACAGGACAUGGGAGCUGUCUCUCACUCCCGCUCGUGUCUUGUGUUGCAGCCAGUGGAACGGCUACACUGUCCACAUCUGAGAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAGACGAAGGUGACCUG--| GG GG AGCUGUCU
UGGCUG CCA GGCUGCAACACAGGACAUGGG C
AUCGGC GGU CCGACGUUGUGUUCUGUGCUC U
CAGAGUCUACACCUGUCAC^ AA GA GCCCUCAC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The 3' end of the 3p arm is also monouridylated when not monoadenylated despite the templated uridine. |
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Dre-Mir-187_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGCUGCAACACAGGACAUGGGA -22
Get sequence
|
|---|
| Mature sequence |
Dre-Mir-187_3p |
| mirBase accession | MIMAT0001274 |
|---|
| Sequence |
40- UCGUGUCUUGUGUUGCAGCCAG -62
Get sequence
|
|---|
| Proposed targets |
TargetScanFish: dre-miR-187
|
|---|
