MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-187

Family name MIR-187 (all species)
Seed CGUGUCU
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-187
Paralogues
Orthologues Aca-Mir-187  Ami-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cli-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Gmo-Mir-187  Hsa-Mir-187  Lch-Mir-187  Loc-Mir-187  Mal-Mir-187  Mdo-Mir-187  Mml-Mir-187  Mmu-Mir-187  Mun-Mir-187  Ocu-Mir-187  Rno-Mir-187  Sha-Mir-187  Spt-Mir-187  Tgu-Mir-187  Tni-Mir-187  Xtr-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041751.1: 4330273-4330330 [-]
Precursor
(pre-Mir +30nt flank)
GUGUGUUGUCCAUCAUCUUGUGAGACCUCCGGCUACAACAGAGGACACAGGAGCUUUUCAGAACCCUCGUGUCUUGUGUUGCAGCCAGAGGAGCACAUCUAUUCGGCACAGAGAGCCC
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Structure
        10           20        30        40         50        
GUGUGUUGUCCAUCAUCU---|   AGA    C    A     G       -   AGCUUU 
                     UGUG   CCUC GGCU CAACA AGGACAC AGG      \
                     ACAC   GGAG CCGA GUUGU UUCUGUG UCC      U
CCCGAGAGACACGGCUUAUCU^   GA-    A    C     G       C   CAAGAC 
      110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut -2 on the 5p arm. The 3' end of the 3p arm is also likely monoadenylated when not monouridylated despite the templated adenosine.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Oan-Mir-187_5p*

mirBase accessionMIMAT0007266
Sequence
0- GGCUACAACAGAGGACACAGGA -22
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Mature sequence

Oan-Mir-187_3p

mirBase accessionMIMAT0007267
Sequence
36- UCGUGUCUUGUGUUGCAGCCAG -58
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