MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-27-P3

Family name MIR-27 (all species)
Seed UCACAGU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-27a
Paralogues Cpo-Mir-27-P2 
Orthologues Aca-Mir-27-P3  Ami-Mir-27-P3  Bta-Mir-27-P3  Cfa-Mir-27-P3  Cmi-Mir-27-P3  Cpi-Mir-27-P3  Dno-Mir-27-P3  Dre-Mir-27-P3  Ete-Mir-27-P3  Gga-Mir-27-P3  Gja-Mir-27-P3  Gmo-Mir-27-P3  Hsa-Mir-27-P3  Lch-Mir-27-P3  Loc-Mir-27-P3  Mal-Mir-27-P3  Mdo-Mir-27-P3  Mml-Mir-27-P3  Mmu-Mir-27-P3  Oan-Mir-27-P3  Ocu-Mir-27-P3  Pbv-Mir-27-P3  Rno-Mir-27-P3  Sha-Mir-27-P3  Sto-Mir-27-P3a  Sto-Mir-27-P3b  Tgu-Mir-27-P3  Tni-Mir-27-P3  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xtr-Mir-27-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_42: 12931848-12931908 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-27-P3)		 Mir-181-P1c scaffold_42: 12912419-12912479 [-] UCSC
Mir-23-P3 scaffold_42: 12931646-12931704 [+] UCSC
Mir-27-P3 scaffold_42: 12931848-12931908 [+] UCSC
Mir-24-P3 scaffold_42: 12931984-12932043 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCCUGGUUGCCUCCACCAGGCCCGAGGAGCAGGGCUUAGCUGCUUGUGAGCAGGGUUCCCACCAGGCGUGUUCACAGUGGCUAAGUUCCGUCCCCCGGGCCCCGCCCUCUGCACCUCCACC
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Structure
        10          20        30        40        50        60
CCCUGGUUGCCUCCACCA--|     A  AG A         UG  U       GGGUUCC 
                    GGCCCG GG  C GGGCUUAGC  CU GUGAGCA       C
                    CCGGGC CC  G CUUGAAUCG  GA CACUUGU       A
CCACCUCCACGUCUCCCGCC^     C  CU C         GU  -       GCGGACC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cpo-Mir-27-P3_5p*
mirBase accessionMIMAT0046890
Sequence 
0- AGGGCUUAGCUGCUUGUGAGCA -22
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Mature sequence

Cpo-Mir-27-P3_3p
mirBase accessionMIMAT0046891
Sequence 
40- UUCACAGUGGCUAAGUUCCGU -61
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