MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-181-P1c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-181c
Paralogues Cpo-Mir-181-P1a  Cpo-Mir-181-P1b  Cpo-Mir-181-P2a  Cpo-Mir-181-P2b 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_42: 12912419-12912479 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-181-P1c)
Mir-181-P1c scaffold_42: 12912419-12912479 [-] UCSC
Mir-23-P3 scaffold_42: 12931646-12931704 [+] UCSC
Mir-27-P3 scaffold_42: 12931848-12931908 [+] UCSC
Mir-24-P3 scaffold_42: 12931984-12932043 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCCCUGAGAUGCUGCCCAAGGGUUUGGGGGAACAUUCAACCUGUCGGUGAGUUUGGACGACUCAGGCAAACCAUCGACCGUUGAGUGGACCCCGAGGCCUGGAUCUGCCAUCCUCCAUCUC
Get precursor sequence
Structure
        10          20        30        40        50        60 
UCCCUGAGAUGCUGCCCAA--|     G    AA        CU       A   UGGACGA 
                     GGGUUU GGGG  CAUUCAAC  GUCGGUG GUU       \
                     UCCGGA CCCC  GUGAGUUG  CAGCUAC CAA       C
CUCUACCUCCUACCGUCUAGG^     G    AG        C-       -   ACGGACU 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cpo-Mir-181-P1c_5p

mirBase accessionMIMAT0047046
Sequence
0- AACAUUCAACCUGUCGGUGAGUU -23
Get sequence
Star sequence

Cpo-Mir-181-P1c_3p*

mirBase accessionMIMAT0047047
Sequence
39- ACCAUCGACCGUUGAGUGGACC -61
Get sequence