MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-218-P4

Family name MIR-218 (all species)
Seed UGUGCUU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-218-2
Paralogues Cpo-Mir-218-P2 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Dno-Mir-218-P4  Dre-Mir-218-P4-v1  Dre-Mir-218-P4-v2  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_17: 14934416-14934479 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-218-P4)		 Mir-218-P4 scaffold_17: 14934416-14934479 [-] UCSC
Mir-12072 scaffold_17: 14952640-14952698 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GACUCUGACCAGUCGCCGCGGGGCUUUCCUUUGUGCUUGAUCUAACCAUGUGGUGGAACGAUGGAAACGGAACAUGGUUCUGUCAAGCACCGCGGAAAGCACCGCGCUCUCCUGCAGCAUGGCC
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Structure
        10          20        30        40        50        60 
GACUCUGACCAGUCGCC--|   G       UUU         CU        GGUGGAACG 
                   GCGG GCUUUCC   GUGCUUGAU  AACCAUGU         A
                   CGCC CGAAAGG   CACGAACUG  UUGGUACA         U
CCGGUACGACGUCCUCUCG^   A       CGC         UC        AGGCAAAGG 
  120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-218-P4_5p
mirBase accessionMIMAT0047125
Sequence 
0- UUGUGCUUGAUCUAACCAUGU -21
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Star sequence

Cpo-Mir-218-P4_3p*
mirBase accessionMIMAT0047127
Sequence 
43- AUGGUUCUGUCAAGCACCGCG -64
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