| MirGeneDB ID | Xtr-Novel-7 |
|---|
| Family name |
XEN-NOVEL-7 (all species) |
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| Seed |
UUCCUGC |
|---|
| Species |
Tropical clawed frog (Xenopus tropicalis) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Xla-Novel-7-P1
Xla-Novel-7-P2
|
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| Node of Origin (locus) |
Xenopus
|
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| Node of Origin (family) |
Xenopus
|
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Genome context
(xenTro9_add) |
chr1: 98200860-98200928 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUACUGCUUAAGAUAUUUUGGGGUUUUGCAGGAUUUCACAUUGCAGGAAGCAAUGGGCUCCAAUAUAUAAAAUAAUGUUUCCUGCAGUGUGACAUCCUGCAAGAUCCUGAGUAAGCUUCAUCUUUGCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UUACUGCUUAAGAUAUU--|UG U AUGGGCUCCAA
U GGGUUUUGCAGGAU UCACAUUGCAGGAAGCA \
A CCUAGAACGUCCUA AGUGUGACGUCCUUUGU U
GUCGUUUCUACUUCGAAUG^GU C AAUAAAAUAUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Xtr-Novel-7_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGAUUUCACAUUGCAGGAAGCA -22
Get sequence
|
|---|
| Mature sequence |
Xtr-Novel-7_3p |
| mirBase accession | None |
|---|
| Sequence |
47- UUUCCUGCAGUGUGACAUCCUG -69
Get sequence
|
|---|
