| MirGeneDB ID | Xtr-Novel-10 |
|---|
| Family name |
XEN-NOVEL-10 (all species) |
|---|
| Seed |
GAUCGGA |
|---|
| Species |
Tropical clawed frog (Xenopus tropicalis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Xla-Novel-10-P1
Xla-Novel-10-P2
|
|---|
| Node of Origin (locus) |
Xenopus
|
|---|
| Node of Origin (family) |
Xenopus
|
|---|
Genome context
(xenTro9_add) |
chr7: 23094426-23094488 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCUACCUAAUCGAUCAGCCAGCAGGCCGAUUGAUCGGAUCUUGUACAAUUUGACCACACAGGUGGAUGUCCAAAUUGUACCGAUCCCAUCUUUUGGCCUGUGGACCAGACAAUCGGAUUGCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCUACCUAAUCGAUCAG---| G UU C UU ACCACACA
CCA CAGGCCGA GAU GGAUC GUACAAUUUG G
GGU GUCCGGUU CUA CCUAG CAUGUUAAAC G
AUCGUUAGGCUAACAGACCA^ - UU C C- CUGUAGGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xtr-Novel-10_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAUCGGAUCUUGUACAAUUUGA -23
Get sequence
|
|---|
| Star sequence |
Xtr-Novel-10_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
41- AAAUUGUACCGAUCCCAUCUUU -63
Get sequence
|
|---|
