Mir-92-P2c3

MirGeneDB ID

Xla-Mir-92-P2c3

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-363

Paralogues

Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xla-Mir-92-P2a Xla-Mir-92-P2c4 Xla-Mir-92-P2d3 Xla-Mir-92-P2d4

Orthologues

Aca-Mir-92-P2c Ami-Mir-92-P2c Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2c Cel-Mir-92 Cfa-Mir-92-P2c Cli-Mir-92-P2c Cmi-Mir-92-P2c Cpi-Mir-92-P2c Cpo-Mir-92-P2c Dno-Mir-92-P2c Dre-Mir-92-P2c Esc-Mir-92 Ete-Mir-92-P2c Gga-Mir-92-P2c Gja-Mir-92-P2c Gmo-Mir-92-P2c Hsa-Mir-92-P2c Isc-Mir-92 Lch-Mir-92-P2c Loc-Mir-92-P2c Mdo-Mir-92-P2c Mml-Mir-92-P2c Mmu-Mir-92-P2c Mun-Mir-92-P2c Oan-Mir-92-P2c Obi-Mir-92 Ocu-Mir-92-P2c Pbv-Mir-92-P2c Rno-Mir-92-P2c Sha-Mir-92-P2c Sme-Mir-92 Spt-Mir-92-P2c Sto-Mir-92-P2c Tgu-Mir-92-P2c Xtr-Mir-92-P2c

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030738.1: 47238172-47238237 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P2c3)

Mir-92-P2c3 NC_030738.1: 47238172-47238237 [-] UCSC Ensembl
Mir-92-P1c3 NC_030738.1: 47238303-47238364 [-] UCSC Ensembl
Mir-19-P2c3 NC_030738.1: 47238435-47238491 [-] UCSC Ensembl
Mir-17-P4c3 NC_030738.1: 47238544-47238604 [-] UCSC Ensembl
Mir-17-P2c3 NC_030738.1: 47238694-47238758 [-] UCSC Ensembl
Mir-17-P1c3 NC_030738.1: 47238821-47238877 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGUAGUAGUGUAAAUUGUUUUGUUGUUCGCGGGUGGAUCACGAUGCAAUUUUAUUUAAGUUUGGUAGGAGAAAAAUUGCACGGUAUCCAUCUGUAAACCGCAGAAUGCCUGUCCAGUUCAUAGAU

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Structure

        10          20        30        40        50        60   
UAGUAGUAGUGUAAAUU--|      U   CG         CA  A         AUUUAAGUU 
                   GUUUUGU GUU  CGGGUGGAU  CG UGCAAUUUU         \
                   UAAGACG CAA  GUCUACCUA  GC ACGUUAAAA         U
UAGAUACUUGACCUGUCCG^      C   AU         UG  -         AGAGGAUGG 
    120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Eg	He	Re	St	St	St	St

Star sequence

Xla-Mir-92-P2c3_5p*

mirBase accession

MIMAT0011147

Sequence

0- CGGGUGGAUCACGAUGCAAUUUU -23

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Mature sequence

Xla-Mir-92-P2c3_3p

mirBase accession

None

Sequence

44- AAUUGCACGGUAUCCAUCUGUA -66

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