MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-128-P1b

Family name MIR-128 (all species)
Seed CACAGUG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-128-P1a  Xla-Mir-128-P2c  Xla-Mir-128-P2d 
Orthologues Aca-Mir-128-P1  Ami-Mir-128-P1  Bta-Mir-128-P1  Cfa-Mir-128-P1  Cli-Mir-128-P1  Cmi-Mir-128-P1  Cpi-Mir-128-P1  Cpo-Mir-128-P1  Dno-Mir-128-P1  Dre-Mir-128-P1  Ebu-Mir-128  Ete-Mir-128-P1  Gga-Mir-128-P1  Gja-Mir-128-P1  Gmo-Mir-128-P1  Hsa-Mir-128-P1  Lch-Mir-128-P1  Loc-Mir-128-P1  Mal-Mir-128-P1  Mdo-Mir-128-P1  Mml-Mir-128-P1  Mmu-Mir-128-P1  Mun-Mir-128-P1  Oan-Mir-128-P1  Ocu-Mir-128-P1  Pbv-Mir-128-P1  Pma-Mir-128-o1  Rno-Mir-128-P1  Sha-Mir-128-P1  Spt-Mir-128-P1  Sto-Mir-128-P1  Tgu-Mir-128-P1  Tni-Mir-128-P1  Xtr-Mir-128-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030735.1: 55536815-55536872 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUAAUAAUAAUUUAUUGUGCAGCUGGAAUGGGGGCUGUUUCACUGUAAGAGAGUGAGUAGUAGGUCUCACAGUGAACCGGUCUCUUUUCUUACUGUAGCAAGUCACUUCAGAAAAGA
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Structure
        10          20        30        40        50         
AGUAAUAAUAAUUUAUUG--|    CU    U        U        AA    GUGAG 
                    UGCAG  GGAA GGGGGCUG UUCACUGU  GAGA     U
                    AUGUC  UCUU UCUCUGGC AAGUGACA  CUCU     A
AGAAAAGACUUCACUGAACG^    AU    U        C        --    GGAUG 
      110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Eg He Re St St St St
Star sequence

Xla-Mir-128-P1b_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGGGGCUGUUUCACUGUAAGAGA -23
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Mature sequence

Xla-Mir-128-P1b_3p
mirBase accessionNone
Sequence 
37- UCACAGUGAACCGGUCUCUUU -58
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