| MirGeneDB ID | Sha-Mir-1547 |
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| Family name |
MIR-1547 (all species) |
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| Seed |
AUCAGAG |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mdo-Mir-1547
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL849719.1: 3577129-3577189 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCACCCCUACUUGAUACAGAACGUAUGAUGUAUCAGAGUCUUGGGUCCUUGUGUAGAUGCUUUGAGACUUCAAGGAUCCCUGACUUGAUCAUUGUGGGUUCUCCCUUCACCGAUGCAACUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCACCCCUACUUGAUAC--| G UG U G UU U- AGAUG
AGAAC UA AUG AUCA AGUC GGGUCCUUG GU C
UCUUG GU UAC UAGU UCAG CCUAGGAAC CA U
CUCAACGUAGCCACUUCCC^ G GU - - UC UU GAGUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-1547_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAUCAGAGUCUUGGGUCCUUGUGU -24
Get sequence
|
|---|
| Star sequence |
Sha-Mir-1547_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UCAAGGAUCCCUGACUUGAUCA -61
Get sequence
|
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