| MirGeneDB ID | Mml-Mir-550-P2 |
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| Family name |
MIR-550 (all species) |
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| Seed |
GUCUUAC |
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| Species |
Rhesus monkey (Macaca mulatta) |
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| MiRBase ID |
mml-mir-550
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| Paralogues |
Mml-Mir-550-P1
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| Orthologues |
Hsa-Mir-550-P2a
Hsa-Mir-550-P2b
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| Node of Origin (locus) |
Catarrhini
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| Node of Origin (family) |
Catarrhini
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Genome context
(rheMac8_trace) |
chr3: 78421495-78421556 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUGGUAUUUUGAUGCUUUGCUGGCUGGUGCAGUGCCUGAGGGGGUAAGAGCCCUGUUGUUGUAAGAUAGUGUCUUACUCCCUCAGGCACAUCUCCAGCAAGUCCCUUGCUGUCCUCCAAUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUGGUAUUUUGAUGCUUU-- G UGCA -| CCUGUUGU
GCU GCUGG GUGCCUGAGGGGGUAAGA GC \
UGA CGACC CACGGACUCCCUCAUUCU UG U
UUUAACCUCCUGUCGUUCCC A UCUA G^ AUAGAAUG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Mir-550 was rejected in Fromm et al. (2015). |
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
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| Star sequence |
Mml-Mir-550-P2_5p* |
| mirBase accession | MIMAT0006418 |
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| Sequence |
0- AGUGCCUGAGGGGGUAAGAGCCC -23
Get sequence
|
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| Proposed targets |
TargetScanVert: mml-miR-550-5p
|
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| Mature sequence |
Mml-Mir-550-P2_3p |
| mirBase accession | MIMAT0026897 |
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| Sequence |
39- UGUCUUACUCCCUCAGGCACAUC -62
Get sequence
|
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| Proposed targets |
TargetScanVert: mml-miR-550-3p
|
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