MirGeneDB ID | Isc-Mir-87-P2 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
isc-mir-87
|
Paralogues |
Isc-Mir-87-P1
|
Orthologues |
Aae-Mir-87-P2
Bge-Mir-87-P2a
Bge-Mir-87-P2b
Cbr-Mir-87-o2
Cel-Mir-87-o2
Cgi-Mir-87-P2
Csc-Mir-87-P2k
Csc-Mir-87-P2l
Cte-Mir-87-P2
Dan-Mir-87-P2-v1
Dan-Mir-87-P2-v2
Dme-Mir-87-P2-v1
Dme-Mir-87-P2-v2
Dmo-Mir-87-P2-v1
Dmo-Mir-87-P2-v2
Dsi-Mir-87-P2-v1
Dsi-Mir-87-P2-v2
Dya-Mir-87-P2-v1
Dya-Mir-87-P2-v2
Hme-Mir-87-P2
Lan-Mir-87-P2
Lpo-Mir-87-P2c
Lpo-Mir-87-P2d
Lpo-Mir-87-P2e
Lpo-Mir-87-P2f
Lpo-Mir-87-P2g
Lpo-Mir-87-P2h
Lpo-Mir-87-P2i
Lpo-Mir-87-P2j
Tca-Mir-87-P2
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (IscaWI) |
DS929532: 41490-41548 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGGUGGGCACACAUCUCGCUUCUUGACUGCCUGCCUGAAAAUUUGUCUCAAACCUUUCAUAGUGUAGGUGAGCAAAGUUUCAGGUGUGUUGUCUUGGAGGACACACUGCAUCUCUGCAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGGUGGGCACACAUCUCG--| UU U C A U AA UUCA
CUUC GAC GC UGCCUGAAA UUUG CUC ACCU U
GAGG CUG UG GUGGACUUU AAAC GAG UGGA A
AACGUCUCUACGUCACACAG^ UU U U G - -- UGUG
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Al |
Mi |
Mi |
Mi |
Sa |
Sa |
Sa |
Sa |
To |
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Star sequence |
Isc-Mir-87-P2_5p* |
mirBase accession | None |
Sequence |
0- CUGCCUGAAAAUUUGUCUCAAACCU -25
Get sequence
|
Mature sequence |
Isc-Mir-87-P2_3p |
mirBase accession | MIMAT0012707 |
Sequence |
37- GUGAGCAAAGUUUCAGGUGUGU -59
Get sequence
|