MirGeneDB 2.1

69 microRNA genes with seed UGAGCAA
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Cbr-Mir-87-o1 cbr-mir-87 MIR-87 UGAGCAA None MIMAT0000492 V 8974034 8974098 + Caenorhabditis Protostomia No 1
Cel-Mir-87-o1 cel-mir-87 MIR-87 UGAGCAA MIMAT0020325 MIMAT0000060 chrV 12038700 12038765 - Caenorhabditis Protostomia No
Cbr-Mir-87-o2 cbr-mir-233 MIR-87 UGAGCAA None MIMAT0000498 X 1737042 1737108 + Caenorhabditis Protostomia No
Cel-Mir-87-o2 cel-mir-233 MIR-87 UGAGCAA MIMAT0020329 MIMAT0000288 chrX 12078602 12078666 - Caenorhabditis Protostomia No
Asu-Mir-87-o3 asu-mir-87a MIR-87 UGAGCAA MIMAT0021481 MIMAT0021482 Scaffold253 297752 297814 - A. suum Protostomia No 1
Asu-Mir-87-o4 asu-mir-87b MIR-87 UGAGCAA MIMAT0021483 MIMAT0021484 Scaffold299 383882 383941 - A. suum Protostomia No
Dma-Mir-87-o5a None MIR-87 UGAGCAA None None NC_046176.1 6157349 6157434 - Daphnia Protostomia No 1
Dpu-Mir-87-o5a None MIR-87 UGAGCAA None None DAPPUscaffold_1 2190896 2190980 + Daphnia Protostomia No 1
Dma-Mir-87-o5b None MIR-87 UGAGCAA None None NC_046176.1 6157168 6157231 - Daphnia Protostomia No 1
Dpu-Mir-87-o5b None MIR-87 UGAGCAA None None DAPPUscaffold_1 2191079 2191142 + Daphnia Protostomia No 1
Esc-Mir-87-o6 None MIR-87 UGAGCAA None None Esc-Mir-87-P2_pre_SRIE01017693.1:1126159-1126299 41 101 - Coleoidea Protostomia No 1
Obi-Mir-87-o6 None MIR-87 UGAGCAA None None KQ425069 58011 58071 - Coleoidea Protostomia No 1
Ovu-Mir-87-o6 None MIR-87 UGAGCAA None None RXHP01053711.1 39863 39923 - Coleoidea Protostomia No 1
Bpl-Mir-87-o7 None MIR-87 UGAGCAA None None QEOQ01000573.1 507118 507197 + B. plicatilis Protostomia No 1
Sme-Mir-87-o8 sme-mir-87a MIR-87 CACUUGG MIMAT0012109 MIMAT0003989 NNSW01000072_dd_Smes_g4_72 3052486 3052550 - S. mediterranea Protostomia No
Sme-Mir-87-o9 sme-mir-87b MIR-87 UGAGCAA MIMAT0012110 MIMAT0003990 NNSW01000183_dd_Smes_g4_183 1003279 1003349 + S. mediterranea Protostomia No 1
Sme-Mir-87-o10 sme-mir-87c MIR-87 UGAGCAA MIMAT0012133 MIMAT0011228 NNSW01000019_dd_Smes_g4_19 1464537 1464595 + S. mediterranea Protostomia No 1
Sme-Mir-87-o11 sme-mir-87d MIR-87 UGAGCAA MIMAT0012136 MIMAT0011235 NNSW01000320_dd_Smes_g4_320 69423 69485 - S. mediterranea Protostomia No 1
Efe-Mir-87-o12 None MIR-87 UGAGCAA None None Efet.01.236014 861 925 + E. fetida Protostomia No
Efe-Mir-87-o13 None MIR-87 UGAGCAA None None scaffold4028-size35901 11038 11096 - E. fetida Protostomia No
Efe-Mir-87-o14 None MIR-87 UGAGCAA None None Efet.01.53011 1093 1153 - E. fetida Protostomia No
Efe-Mir-87-o15 None MIR-87 UGAGCAA None None Efet.01.241300 131 190 - E. fetida Protostomia No 1 1 1
Efe-Mir-87-o16 None MIR-87 UGAGCAA None None Efet.01.244941 2060 2124 + E. fetida Protostomia No 1 1
Efe-Mir-87-o17 None MIR-87 UGAGCAA None None Efet.01.649873 298 359 + E. fetida Protostomia No
Efe-Mir-87-o18 None MIR-87 CGCCUGA None None Efet.01.588090 349 410 - E. fetida Protostomia No
Bge-Mir-87-P1 None MIR-87 UGAGCAA None None KZ618078.1 9512 9567 - Protostomia Protostomia No 1
Cgi-Mir-87-P1 None MIR-87 UGAGCAA None None scaffold1600 144750 144808 + Protostomia Protostomia No 1
Cte-Mir-87-P1 cte-mir-87b MIR-87 UGAGCAA None MIMAT0009519 CAPTEscaffold_222 219605 219665 - Protostomia Protostomia No 1
Isc-Mir-87-P1 None MIR-87 UGAGCAA None None DS929532 41909 41969 - Protostomia Protostomia No 1 1
Lan-Mir-87-P1 None MIR-87 UGAGCAA None None LFEI01000460 49414 49469 + Protostomia Protostomia No 1
Lgi-Mir-87-P1 lgi-mir-87 MIR-87 UGAGCAA None MIMAT0009573 LOTGIsca_160 256830 256887 + Protostomia Protostomia No 1
Tca-Mir-87-P1 tca-mir-87a MIR-87 UGAGCAA MIMAT0019110 MIMAT0008366 LG6 1499347 1499408 + Protostomia Protostomia No 1 1 1
Lpo-Mir-87-P1c None MIR-87 UGAGCAA None None NW_013666175.1 461346 461406 + L. polyphemus Protostomia No 1
Lpo-Mir-87-P1d None MIR-87 UGAGCAA None None NW_013665817.1 444807 444867 + L. polyphemus Protostomia No
Lpo-Mir-87-P1e None MIR-87 UGAGCAA None None NW_013665700.1 1212340 1212400 + L. polyphemus Protostomia No 1 1
Lpo-Mir-87-P1f None MIR-87 UGAGCAA None None NW_013665665.1 445290 445350 - L. polyphemus Protostomia No 1
Lpo-Mir-87-P1g None MIR-87 UGAGCAA None None NW_013665613.1 1477323 1477382 - L. polyphemus Protostomia No
Lpo-Mir-87-P1h None MIR-87 UGAGCAA None None NW_013667735.1 132492 132555 + L. polyphemus Protostomia No 1
Lpo-Mir-87-P1i None MIR-87 UGAGCAA None None NW_013674525.1 9051 9111 - L. polyphemus Protostomia No
Lpo-Mir-87-P1j None MIR-87 UGAGCAA None None NW_013672524.1 1301 1364 + L. polyphemus Protostomia No
Csc-Mir-87-P1k1 None MIR-87 UGAGCAA None None NW_019384773.1 172192 172253 - C. sculpturatus Protostomia Unknown 1
Csc-Mir-87-P1k2 None MIR-87 UGAGCAA None None NW_019384655.1 735508 735569 - C. sculpturatus Protostomia Unknown
Csc-Mir-87-P1l None MIR-87 UGAGCAA None None NW_019384506.1 706723 706782 + C. sculpturatus Protostomia Unknown 1 1
Aae-Mir-87-P2 aae-mir-87 MIR-87 UGAGCAA None MIMAT0014252 supercont1.360 1010798 1010867 + Protostomia Protostomia No 1 1
Cgi-Mir-87-P2 None MIR-87 UGAGCAA None None scaffold1600 146061 146122 + Protostomia Protostomia No 1
Cte-Mir-87-P2 cte-mir-87a MIR-87 UGAGCAA None MIMAT0009518 CAPTEscaffold_222 219067 219151 - Protostomia Protostomia No 1
Hme-Mir-87-P2 hme-mir-87 MIR-87 UGAGCAA None MIMAT0024989 HE668834 53115 53175 + Protostomia Protostomia No
Isc-Mir-87-P2 isc-mir-87 MIR-87 UGAGCAA None MIMAT0012707 DS929532 41490 41548 - Protostomia Protostomia No 1
Lan-Mir-87-P2 None MIR-87 UGAGCAA None None LFEI01000460 49823 49883 + Protostomia Protostomia No 1
Tca-Mir-87-P2 tca-mir-87b MIR-87 UGAGCAA MIMAT0018768 MIMAT0018769 LG6 1502215 1502272 + Protostomia Protostomia No 1 1
Dan-Mir-87-P2-v1 dan-mir-87 MIR-87 UGAGCAA None MIMAT0008411 scaffold_12916 13789788 13789859 - Protostomia Protostomia No 1
Dme-Mir-87-P2-v1 dme-mir-87 MIR-87 UGAGCAA MIMAT0020821 MIMAT0000361 2L 9950433 9950504 - Protostomia Protostomia No 1
Dmo-Mir-87-P2-v1 dmo-mir-87 MIR-87 UGAGCAA None MIMAT0008662 scaffold_6500 14729884 14729956 - Protostomia Protostomia No 1
Dsi-Mir-87-P2-v1 dsi-mir-87 MIR-87 UGAGCAA None MIMAT0008844 2L 9648332 9648403 - Protostomia Protostomia No 1
Dya-Mir-87-P2-v1 dya-mir-87 MIR-87 UGAGCAA None MIMAT0009053 2L 12640997 12641068 - Protostomia Protostomia No 1
Bge-Mir-87-P2a None MIR-87 UGAGCAA None None KZ618078.1 8798 8855 - B. germanica Protostomia No
Bge-Mir-87-P2b None MIR-87 UGAGCAA None None KZ615904.1 366017 366074 - B. germanica Protostomia No
Lpo-Mir-87-P2c None MIR-87 UGAGCAA None None NW_013666175.1 463869 463927 + L. polyphemus Protostomia No 1
Lpo-Mir-87-P2d None MIR-87 UGAGCAA None None NW_013665817.1 452773 452833 + L. polyphemus Protostomia No 1
Lpo-Mir-87-P2e None MIR-87 UGAGCAA None None NW_013665700.1 1213267 1213325 + L. polyphemus Protostomia No 1
Lpo-Mir-87-P2f None MIR-87 UGAGCAA None None NW_013665665.1 443855 443913 - L. polyphemus Protostomia No 1
Lpo-Mir-87-P2g None MIR-87 UGAGCAA None None NW_013665613.1 1476334 1476392 - L. polyphemus Protostomia No 1
Lpo-Mir-87-P2h None MIR-87 UGAGCAA None None NW_013667735.1 133581 133641 + L. polyphemus Protostomia No
Lpo-Mir-87-P2i None MIR-87 UGAGCAA None None NW_013674525.1 7075 7135 - L. polyphemus Protostomia No
Lpo-Mir-87-P2j None MIR-87 UGAGCAA None None NW_013802694.1 1353 1412 + L. polyphemus Protostomia No 1
Csc-Mir-87-P2k None MIR-87 UGAGCAA None None NW_019384773.1 171965 172023 - C. sculpturatus Protostomia Unknown 1
Csc-Mir-87-P2l None MIR-87 UGAGCAA None None NW_019384506.1 706960 707019 + C. sculpturatus Protostomia Unknown 1
Obi-Novel-87-v2 None OCT-NOVEL-87 UGAGCAA None None KQ415659 1637502 1637560 + Octopus Octopus No
Ovu-Novel-87-v2 None OCT-NOVEL-87 UGAGCAA None None RXHP01012207.1 1451429 1451487 + Octopus Octopus No

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all