MirGeneDB ID | Esc-Novel-4 |
Family name |
CEP-NOVEL-4 (all species) |
Seed |
CGGUCAU |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Npo-Novel-4
Obi-Novel-4
Ovu-Novel-4
|
Node of Origin (locus) |
Cephalopoda
|
Node of Origin (family) |
Cephalopoda
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-4_pre_SRIE01029538.1:715110-715367: 101-158 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUAAGUAAGCUACAUUAAAGUUGGUUGCAACAGGGUAGAUAUAGGGCCCGUGUAGAUUUGAAUCCGUCGGUCAUAUGUCUGCCUGAUUGUAAUCGAUUUAAACCACAACGUUUAAGAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUAAGUAAGCUACAUUA--| CA G CG UAGAU
AAGUUGGUUGCAA GGGUAGAUAUA GGCC UG U
UUUAGCUAAUGUU UCCGUCUGUAU CUGG GC U
UAGAAUUUGCAACACCAAA^ AG A CU CUAAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Novel-4_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CAGGGUAGAUAUAGGGCCCGUG -22
Get sequence
|
Mature sequence |
Esc-Novel-4_3p |
mirBase accession | None |
Sequence |
36- UCGGUCAUAUGUCUGCCUGAUU -58
Get sequence
|