| MirGeneDB ID | Efe-Mir-36-P9 |
|---|
| Family name |
MIR-36 (all species) |
|---|
| Seed |
CACCGGG |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Efe-Mir-36-P10
|
|---|
| Orthologues |
Bge-Mir-36
Cbr-Mir-36-o9
Cgi-Mir-36
Cte-Mir-36
Dma-Mir-36
Dpu-Mir-36
Isc-Mir-36
Npo-Mir-36
Tca-Mir-36
|
|---|
| Node of Origin (locus) |
E. fetida
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(Efe_combined) |
Efet.01.42296: 4397-4458 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCCCCGCACAGGAAACGGUCGCUUAAACUUGGUGAAUGUAUUCCGGGUAGGUGGUCCUUAUUAAUAUUCAUCACCGGGUUUACAUUCAUCCCGUUCUUUGUGGCAUUUUCAGCUGACCCAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCCCCGCACAGGAAACG- UUA-| UU UU G A GUCCUUA
GUCGC AAC GGUGAAUGUA CC GGU GGUG \
CGGUG UUG CUACUUACAU GG CCA CUAC U
GGACCCAGUCGACUUUUA UUUC^ CC UU G - UUAUAAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-36-P9_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GGUGAAUGUAUUCCGGGUAGGUG -23
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-36-P9_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UCACCGGGUUUACAUUCAUCCC -62
Get sequence
|
|---|
