MirGeneDB ID | Efe-Mir-36-P10 |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-36-P9
|
Orthologues |
Bge-Mir-36
Cbr-Mir-36-o10
Cgi-Mir-36
Cte-Mir-36
Dma-Mir-36
Dpu-Mir-36
Isc-Mir-36
Npo-Mir-36
Tca-Mir-36
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Protostomia
|
Genome context (Efe_combined) |
Efet.01.229867: 2803-2864 [+]
|
Precursor (pre-Mir +30nt flank) |
UUUUAAGCGGAAGGAAGUGCUCUGUCGCCCGGUGAAUGCAUUCUGGGUACGAUGUCGAAACGAUUAGUCAUCACCGGGUUUGUAUUCAUCCGGGUUCCAGAAGAACCAAGCUACGCAUGCGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUUAAGCGGAAGGAAGUGC- UC -| UU G AC UCGAAA
UCUG GCCCGG UGAAUGCA CU GGU GAUG C
AGAC UGGGCC ACUUAUGU GG CCA CUAC G
CGCGUACGCAUCGAACCAAGA CU U^ UU G -- UGAUUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Efe-Mir-36-P10_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGUGAAUGCAUUCUGGGUACGAUG -24
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|
Mature sequence |
Efe-Mir-36-P10_3p |
mirBase accession | None |
Sequence |
40- UCACCGGGUUUGUAUUCAUCCG -62
Get sequence
|