| MirGeneDB ID | Cmi-Mir-430-P1 |
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| Family name |
MIR-430 (all species) |
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| Seed |
AAGUGCU |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
Cmi-Mir-430-o36
Cmi-Mir-430-P2
Cmi-Mir-430-P3
Cmi-Mir-430-P4
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| Orthologues |
Aca-Mir-430-P1
Ami-Mir-430-P1
Bta-Mir-430-P1
Cfa-Mir-430-P1
Cli-Mir-430-P1
Cpi-Mir-430-P1
Cpo-Mir-430-P1
Dno-Mir-430-P1
Dre-Mir-430-o1a
Dre-Mir-430-o1b1
Dre-Mir-430-o1b2
Dre-Mir-430-o1b3
Dre-Mir-430-o1b4
Dre-Mir-430-o1b5
Dre-Mir-430-o1b6
Dre-Mir-430-o1b7
Dre-Mir-430-o1b8
Dre-Mir-430-o1c
Dre-Mir-430-o1d1
Dre-Mir-430-o1d2
Dre-Mir-430-o1d3
Dre-Mir-430-o1d4
Dre-Mir-430-o1d5
Dre-Mir-430-o1d6
Dre-Mir-430-o1d7
Dre-Mir-430-o1e1
Dre-Mir-430-o1e2
Dre-Mir-430-o1e3
Ete-Mir-430-P1
Gga-Mir-430-P1
Hsa-Mir-430-P1
Mdo-Mir-430-P1
Mml-Mir-430-P1
Mmu-Mir-430-P1
Mun-Mir-430-P1
Oan-Mir-430-P1
Ocu-Mir-430-P1
Rno-Mir-430-P1
Sha-Mir-430-P1
Spt-Mir-430-P1
Sto-Mir-430-P1
Tgu-Mir-430-P1
Xla-Mir-430-P1a
Xla-Mir-430-P1b
Xtr-Mir-430-P1
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635904.1: 4109282-4109340 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGAGCAAAAUCUUUUUGUGUGUCGCCUGCUACGUCAACAUAGAAGCCUUUCUGUGAUAUAAUUGAGUAAGUGCUUUUAUGUUGAAGUGGCAGUGGGUGCUUGAUUCUUCAUUUUAAAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGAGCAAAAUCUUUUUGU-- UG GC G -| U GUGAU
G UC CUGCUAC UCAACAUAGAAGC CUU CU A
C GG GACGGUG AGUUGUAUUUUCG GAA GA U
CAAAAUUUUACUUCUUAGUU GU GU A U^ U GUUAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Mir-430-P1_5p* |
| mirBase accession | None |
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| Sequence |
0- ACGUCAACAUAGAAGCCUUUCU -22
Get sequence
|
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| Mature sequence |
Cmi-Mir-430-P1_3p |
| mirBase accession | None |
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| Sequence |
36- UAAGUGCUUUUAUGUUGAAGUGG -59
Get sequence
|
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