MirGeneDB 2.1
MirGeneDB ID

Cin-Mir-4062-P2

Family name MIR-4062 (all species)
Seed AUGCUGU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4062
Paralogues Cin-Mir-4062-P1 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 5: 996382-996447 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4062-P2)		 Mir-4062-P1 5: 996178-996244 [+] UCSC Ensembl
Mir-4062-P2 5: 996382-996447 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCUGCUUUAUAUAUGGCGUGCGCGGAUCCGCCUGCAUCUUUACAGCUUCAAGUGCUGCGUUGUAUUGACUGAAUGCUGUAAAAUAAAGGCAAGAUCAUCGUACGCACACUCCACGAAAUAGUUC
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Structure
        10          20        30         40         50        60  
AGCCUGCUUUAUAUAUG--       CG    C-|   GCAUC        -    AGUGCUGCG 
                   GCGUGCG  GAUC  GCCU     UUUACAGC UUCA         \
                   CGCAUGC  CUAG  CGGA     AAAUGUCG AAGU         U
CUUGAUAAAGCACCUCACA       UA    AA^   AAUA-        U    CAGUUAUGU 
    120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Star sequence

Cin-Mir-4062-P2_5p*
mirBase accessionMIMAT0016612
Sequence 
0- CGCCUGCAUCUUUACAGCUUCA -22
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Mature sequence

Cin-Mir-4062-P2_3p
mirBase accessionMIMAT0016613
Sequence 
43- AAUGCUGUAAAAUAAAGGCAAGA -66
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