| MirGeneDB ID | Asu-Mir-87-o4 |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-87b
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| Paralogues |
Asu-Mir-87-o3
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| Orthologues |
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| Node of Origin (locus) |
A. suum
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| Node of Origin (family) |
Protostomia
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold299: 383882-383941 [-]
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Precursor
(pre-Mir +30nt flank) |
GUUGUGUAGAACAACGAAGAGAGUGCUCGACGCCUGGAACUUAGACUCAACCUCAGUGUAAUUGCGUAGGUGAGCAAAGUUUCAGGUGUUCGAGCGCCUUCUUUCGUUCGCACCUUCCCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUUGUGUAGAACAACGA- A -| AGA A CAGUGU
AGAG GUGCUCG ACGCCUGGAACUU CUCA CCU A
UCUU CGCGAGC UGUGGACUUUGAA GAGU GGA A
CCCCUUCCACGCUUGCUU C U^ AC- - UGCGUU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| 0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Mir-87-o4_5p* |
| mirBase accession | MIMAT0021483 |
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| Sequence |
0- CGCCUGGAACUUAGACUCAACCU -23
Get sequence
|
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| Mature sequence |
Asu-Mir-87-o4_3p |
| mirBase accession | MIMAT0021484 |
|---|
| Sequence |
39- GUGAGCAAAGUUUCAGGUGUU -60
Get sequence
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