MirGeneDB ID | Xla-Mir-221-P1a4 |
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Family name | MIR-221 (all species) |
Seed | GCUACAU |
Species | African clawed frog (Xenopus laevis) |
MiRBase ID | xla-mir-222 |
Paralogues | Xla-Mir-221-P1a3 Xla-Mir-221-P2a3 Xla-Mir-221-P2a4 |
Orthologues | Aca-Mir-221-P1a Ami-Mir-221-P1a Bta-Mir-221-P1a Cfa-Mir-221-P1a Cli-Mir-221-P1a Cmi-Mir-221-P1a Cpi-Mir-221-P1a Cpo-Mir-221-P1a Dno-Mir-221-P1a Ete-Mir-221-P1a Gga-Mir-221-P1a Gja-Mir-221-P1a Hsa-Mir-221-P1a Lch-Mir-221-P1a Loc-Mir-221-P1a Mdo-Mir-221-P1a Mml-Mir-221-P1a Mmu-Mir-221-P1a Mun-Mir-221-P1a Oan-Mir-221-P1a Ocu-Mir-221-P1a Pbv-Mir-221-P1a Rno-Mir-221-P1a Sha-Mir-221-P1a Spt-Mir-221-P1a Sto-Mir-221-P1a Tgu-Mir-221-P1a Xtr-Mir-221-P1a |
Node of Origin (locus) | X. laevis |
Node of Origin (family) | Vertebrata |
Genome context (GCF_001663975.1_XLA_v2) |
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Precursor (pre-Mir +30nt flank) | CGCUCAGUAAUCAGUGUAGAUCCUGUAUUUCUGUCAGCAGCUACAUCUGGCUACUGGGUCUCGet precursor sequence |
Structure | 10 20 30 C-- AU -| AUC U U GCUCAGUA CAG UGUAG CUG AU U UGGGUCAU GUC ACAUC GAC UG C CUC CG U^ GAC - U 60 50 40 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Star sequence | Xla-Mir-221-P1a4_5p* |
mirBase accession | MIMAT0046544 |
Sequence |
0- CGCUCAGUAAUCAGUGUAGAUCC -23
Get sequence
|
Mature sequence | Xla-Mir-221-P1a4_3p |
mirBase accession | MIMAT0046545 |
Sequence |
38- AGCUACAUCUGGCUACUGGGUCUC -62
Get sequence
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