| MirGeneDB ID | Sme-Mir-2166 |
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| Family name |
MIR-2166 (all species) |
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| Seed |
AGAAUAA |
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| Species |
Freshwater planarian (Schmidtea mediterranea) |
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| MiRBase ID |
sme-mir-2166
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. mediterranea
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| Node of Origin (family) |
S. mediterranea
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Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000079_dd_Smes_g4_79: 1079371-1079435 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGAACAUAAAAUAUGAAAUCUAUUUUUCUCUAGAAUAAAACAGAUAACCAAUCAUGUUGCAGUUGAAUCUGAUUGGUCACUUGCUUUAUUCACUCAUAAAUCUAAAUUAAAUAGCCGAAUUUUUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GGAACAUAAAAUAUGAAAUCUAUUUUUCUCUA--| A AUA UGUUGCA
GAAUAAA CAG ACCAAUCA \
CUUAUUU GUU UGGUUAGU G
CUUUUUAAGCCGAUAAAUUAAAUCUAAAUACUCA^ C CAC CUAAGUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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| Mature sequence |
Sme-Mir-2166_5p |
| mirBase accession | None |
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| Sequence |
0- UAGAAUAAAACAGAUAACCAAUCA -24
Get sequence
|
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| Co-mature sequence |
Sme-Mir-2166_3p |
| mirBase accession | MIMAT0011263 |
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| Sequence |
42- UUGGUCACUUGCUUUAUUCACUC -65
Get sequence
|
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