MirGeneDB ID | Ovu-Novel-20-P2 |
Family name |
COL-NOVEL-20 (all species) |
Seed |
UCGGGAG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Novel-20-P1
|
Orthologues |
Esc-Novel-20
Obi-Novel-20-P2
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Node of Origin (locus) |
Octopus
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01008960.1: 7572-7631 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
ACAUAGGACAAAGUUACUAGCAUGCACGACCAUCUGACUUGCCUCCUGCGGAACACAAUCUGCAUAUCCUCGGGAGACAAGUGAGAUGUCGUGCAUUAGCUGAUGAGACUACAGUCCUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
ACAUAGGACAAAGUUAC- --| C G C C ACACAA
UAGC AUGCACGAC AUCU ACUUG CUCCUG GGA U
GUCG UACGUGCUG UAGA UGAAC GAGGGC CCU C
AGUCCUGACAUCAGAGUA AU^ - G A U AUACGU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Novel-20-P2_5p* |
mirBase accession | None |
Sequence |
0- CAUCUGACUUGCCUCCUGCGGA -22
Get sequence
|
Mature sequence |
Ovu-Novel-20-P2_3p |
mirBase accession | None |
Sequence |
38- CUCGGGAGACAAGUGAGAUGUC -60
Get sequence
|