MirGeneDB ID | Ovu-Novel-17 |
Family name |
COL-NOVEL-17 (all species) |
Seed |
GCAAGAC |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-17-v1
Esc-Novel-17-v2
Obi-Novel-17
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01019200.1: 72952-73009 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CAGAAUCUGGCAUCUUGUUGAGAGUCACUGAGCAAGACAGACUUACUUUUGUGACUUUUAUCACCAAAGGGUUUCUGUGUUGUCCUCAGUUACCUCUCUCCUCCCAUCAUAUGUCUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGAAUCUGGCAUCUUGUU- UC- --| G CUUA UGACUU
GAGAG ACUGAG CAA ACAGA CUUUUG \
CUCUC UGACUC GUU UGUCU GGAAAC U
UAUCUGUAUACUACCCUCCU CAU CU^ G UUG- CACUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Mature sequence |
Ovu-Novel-17_5p |
mirBase accession | None |
Sequence |
0- AGCAAGACAGACUUACUUUUGU -22
Get sequence
|
Star sequence |
Ovu-Novel-17_3p* |
mirBase accession | None |
Sequence |
34- CAAAGGGUUUCUGUGUUGUCCUCA -58
Get sequence
|