MirGeneDB ID | Lpo-Mir-279-P11 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-279-P9
Lpo-Mir-279-P10
Lpo-Mir-279-P12
Lpo-Mir-279-P13
|
Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Cte-Mir-279-o11
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666253.1: 358370-358428 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCGAAUGUGAUUGUUUAUCUUUGACUGUGGAUGAUUGUGAUUCUGGUUCAUGUGUACUUGUUACCAUGACUAGAUCCACACUCAUCCAUAGAAACUGAUAUUUCUUCGAUGCACGCGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGCGAAUGUGAUUGUUU--| UUUGA U AU U UGUAC
AUC CUGUGGAUGA UGUG UCUGGU CAUG U
UAG GAUACCUACU ACAC AGAUCA GUAC U
CGCGCACGUAGCUUCUUUA^ UCAAA C CU - CAUUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Lpo-Mir-279-P11_5p* |
mirBase accession | None |
Sequence |
0- GAUGAUUGUGAUUCUGGUUCAUG -23
Get sequence
|
Mature sequence |
Lpo-Mir-279-P11_3p |
mirBase accession | None |
Sequence |
37- UGACUAGAUCCACACUCAUCCA -59
Get sequence
|