MirGeneDB ID | Esc-Mir-36-P14 |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Mir-36-P15
|
Orthologues |
Bge-Mir-36
Cbr-Mir-36-o14
Cgi-Mir-36
Cte-Mir-36
Dma-Mir-36
Dpu-Mir-36
Isc-Mir-36
Npo-Mir-36
Obi-Mir-36-P14
Ovu-Mir-36-P14
Tca-Mir-36
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Mir-36-P14_pre_SRIE01038885.1:240183-240444: 101-162 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUUGAGUUAGAUUUUCGAAGAUUUCGAUUGGGUGGUGUUCACCCGGUUGGUGUUUUGUUUAAGUUUCAUCACCGGGUAAACAUUCAUUCGCUUGCUUUCUUCACUGUCGAUUUCCAAAAUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUUGAGUUAGAUUUUC-- UUU U -| C U UUUUGU
GAAGA CGA UGGGUG GUGUU ACCCGGU GGUG U
CUUCU GUU GCUUAC UACAA UGGGCCA CUAC U
GUAAAACCUUUAGCUGUCA UUC C U^ A - UUUGAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Esc-Mir-36-P14_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGGUGGUGUUCACCCGGUUGGUG -23
Get sequence
|
Mature sequence |
Esc-Mir-36-P14_3p |
mirBase accession | None |
Sequence |
39- UCACCGGGUAAACAUUCAUUCGC -62
Get sequence
|