MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-722-P1-v1

Family name MIR-722 (all species)
Seed UUUGCAG
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues Dre-Mir-722-P1-v2  Dre-Mir-722-P2-v1  Dre-Mir-722-P2-v2 
Orthologues Gmo-Mir-722-P1-v1  Gmo-Mir-722-P1-v2  Lch-Mir-722  Mal-Mir-722-P1-v1  Mal-Mir-722-P1-v2  Tni-Mir-722-P1-v1  Tni-Mir-722-P1-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Osteichthyes
Genome context
(danRer11)
chr3: 49815209-49815273 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACCUGCCCACAGACUGGAACAGAAUGGAAUUUGAAACGUUUUAGCCAAAAAUGUUUCCAUGGUAAAGGUGUUUUUUGCAGAAACGUUUCAGAUUUCGUUCUGUUCUCCAACUACGGGGAUGAAA
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Structure
        10          20        30        40        50        60  
AACCUGCCCACAGACUG--|                         A  C     UGUUUCCAU 
                   GAACAGAAUGGAAUUUGAAACGUUUU GC AAAAA         \
                   CUUGUCUUGCUUUAGACUUUGCAAAG CG UUUUU         G
AAAGUAGGGGCAUCAACCU^                         A  U     GUGGAAAUG 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-722-P1-v1_5p*

mirBase accessionNone
Sequence
0- UUUGAAACGUUUUAGCCAAAAA -22
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Mature sequence

Dre-Mir-722-P1-v1_3p

mirBase accessionNone
Sequence
43- UUUUGCAGAAACGUUUCAGAUU -65
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