MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-338-2
Paralogues Dre-Mir-338-P2a  Dre-Mir-338-P2b 
Orthologues Ami-Mir-338-P1  Cli-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr12: 17727559-17727620 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGUGUGUGUGUUUCUGGUGCCUGCUGAGAACAAUAUCCUGAUGCUGAAUGAGUGUGUUGAAGGAAACUCCAGCAUCAGUGAUUUUGUUGCCAGAGGAGCACUUUGGGCAUCCUGUGUAUA
Get precursor sequence
Structure
        10         20         30         40        50        60 
UGUGUGUGUGUGUUUCU-     -  G   AG     U   -|        AAU    GUGUU 
                  GGUGC CU CUG  AACAA AUC CUGAUGCUG   GAGU     G
                  UCACG GG GAC  UUGUU UAG GACUACGAC   CUCA     A
AUAUGUGUCCUACGGGUU     A  A   CG     U   U^        ---    AAGGA 
120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-338-P1_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCUGAAUGAGU -25
Get sequence
Mature sequence

Dre-Mir-338-P1_3p
mirBase accessionMIMAT0001873
Sequence 
39- UCCAGCAUCAGUGAUUUUGUUGC -62
Get sequence
Proposed targets TargetScanFish: dre-miR-338