MirGeneDB ID | Bpl-Mir-36-P18 |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Rotifer (Brachionus plicatilis) |
MiRBase ID |
|
Paralogues |
Bpl-Mir-36-P17
Bpl-Mir-36-P19
|
Orthologues |
Bge-Mir-36
Cbr-Mir-36-o18
Cgi-Mir-36
Cte-Mir-36
Dma-Mir-36
Dpu-Mir-36
Isc-Mir-36
Npo-Mir-36
Tca-Mir-36
|
Node of Origin (locus) |
B. plicatilis
|
Node of Origin (family) |
Protostomia
|
Genome context (Bpl_ASM1027981) |
QEOQ01000180.1: 141460-141519 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCUCAAUGCCUCUAUGCUUAUGCUCAGCUGGUGAGGUGACACGCGGCAGAUAUAGCUCACAACAUAUCACCGGGUAACACACUCACCUUUCGAGUACAAUUGUUCACAUCUAUGUCUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCUCAAUGCCUCUAUGCUUA-- AGCU -| AC G CA UAGCU
UGCUC GGUGAG GUG AC CGG GAUA C
AUGAG CCACUC CAC UG GCC CUAU A
UGUCUGUAUCUACACUUGUUAAC CUUU A^ AA G A- ACAAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bpl-Mir-36-P18_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGUGAGGUGACACGCGGCAGAUA -23
Get sequence
|
Mature sequence |
Bpl-Mir-36-P18_3p |
mirBase accession | None |
Sequence |
37- UCACCGGGUAACACACUCACCUU -60
Get sequence
|