MirGeneDB ID | Xtr-Mir-199-P2 |
Family name |
MIR-199 (all species) |
Seed |
CCAGUGU |
Species |
Tropical clawed frog (Xenopus tropicalis) |
MiRBase ID |
xtr-mir-199b
|
Paralogues |
Xtr-Mir-199-P3-v1
Xtr-Mir-199-P3-v2
Xtr-Mir-199-P3-v3
|
Orthologues |
Aca-Mir-199-P2-v1
Aca-Mir-199-P2-v2
Aca-Mir-199-P2-v3
Ami-Mir-199-P2-v1
Ami-Mir-199-P2-v2
Ami-Mir-199-P2-v3
Bta-Mir-199-P2-v1
Bta-Mir-199-P2-v2
Bta-Mir-199-P2-v3
Cfa-Mir-199-P2-v1
Cfa-Mir-199-P2-v2
Cfa-Mir-199-P2-v3
Cpi-Mir-199-P2-v1
Cpi-Mir-199-P2-v2
Cpi-Mir-199-P2-v3
Cpo-Mir-199-P2-v1
Cpo-Mir-199-P2-v2
Cpo-Mir-199-P2-v3
Dre-Mir-199-P2-v1
Dre-Mir-199-P2-v2
Dre-Mir-199-P2-v3
Ete-Mir-199-P2-v1
Ete-Mir-199-P2-v2
Ete-Mir-199-P2-v3
Hsa-Mir-199-P2-v1
Hsa-Mir-199-P2-v2
Hsa-Mir-199-P2-v3
Mdo-Mir-199-P2-v1
Mdo-Mir-199-P2-v2
Mdo-Mir-199-P2-v3
Mml-Mir-199-P2-v1
Mml-Mir-199-P2-v2
Mml-Mir-199-P2-v3
Mmu-Mir-199-P2-v1
Mmu-Mir-199-P2-v2
Mmu-Mir-199-P2-v3
Ocu-Mir-199-P2-v1
Ocu-Mir-199-P2-v2
Ocu-Mir-199-P2-v3
Sha-Mir-199-P2-v1
Sha-Mir-199-P2-v2
Sha-Mir-199-P2-v3
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (xenTro7) |
KB021670: 879314-879374 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
AAGAUCCCGAGAGGUGGGUGGUCCCGUUCCCCCAGUGUUCAGACUACGUGUUCGUUGGACAGAACCUGAACAGUAGUCUACACACUGGUUAAACUGGGCCAUGCGGUCAACUGCUGCACAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGAUCCCGAGAGGUGG--| C CCC UC G GUUGGA
GUGGUCC GUU CCAGUGU AGACUAC UGUUC C
UACCGGG CAA GGUCACA UCUGAUG ACAAG A
UACACGUCGUCAACUGGCG^ U AUU CA - UCCAAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Xenopus is arm-shifted relative to all other vertebrates and does not show the conserved set of processing variants. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xtr-Mir-199-P2_5p |
MirBase accession | MIMAT0003692 |
Sequence |
0- CCCAGUGUUCAGACUACGUGUUC -23
Get sequence
|
Validated targets |
TargetScanVert: xtr-miR-199b
|
Star sequence |
Xtr-Mir-199-P2_3p* |
MirBase accession | None |
Sequence |
39- ACAGUAGUCUACACACUGGUUA -61
Get sequence
|