MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-194-P1

Family name MIR-194 (all species)
Seed GUAACAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-194-1
Paralogues Xtr-Mir-194-P2 
Orthologues Aca-Mir-194-P1  Ami-Mir-194-P1  Bta-Mir-194-P1  Cfa-Mir-194-P1  Cli-Mir-194-P1  Cmi-Mir-194-P1  Cpi-Mir-194-P1  Ebu-Mir-194-o1  Ete-Mir-194-P1  Gga-Mir-194-P1  Gja-Mir-194-P1  Hsa-Mir-194-P1  Lch-Mir-194-P1  Mml-Mir-194-P1  Mmu-Mir-194-P1  Mun-Mir-194-P1  Oan-Mir-194-P1  Ocu-Mir-194-P1  Pbv-Mir-194-P1  Pma-Mir-194-o1  Rno-Mir-194-P1  Spt-Mir-194-P1  Sto-Mir-194-P1  Tgu-Mir-194-P1  Xla-Mir-194-P1a  Xla-Mir-194-P1b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr5: 6915468-6915523 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P1)
Mir-194-P1 chr5: 6915468-6915523 [+] UCSC Ensembl
Mir-192-P1 chr5: 6916171-6916232 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGUAGAAGAGCCUAUAGUGUGUAUCAGGUGUAACAGCAACUCCAUGUGGACUUGUCCGUAUUCCAGUGGAGAUGCUGUUACUUUUGAUGGGCACUUACUGACCAGUGACAAGAG
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Structure
        10          20        30        40        50        
GGAGUAGAAGAGCCUAU--|    G       U         A      G    CUUGU 
                   AGUGU UAUCAGG GUAACAGCA CUCCAU UGGA     \
                   UCACG GUAGUUU CAUUGUCGU GAGGUG ACCU     C
GAGAACAGUGACCAGUCAU^    G       U         A      -    UAUGC 
    110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-194-P1_5p

mirBase accessionMIMAT0003617
Sequence
0- UGUAACAGCAACUCCAUGUGGA -22
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Proposed targets TargetScanVert: xtr-miR-194
Star sequence

Xtr-Mir-194-P1_3p*

mirBase accessionNone
Sequence
35- CAGUGGAGAUGCUGUUACUUU -56
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