MirGeneDB

MirGeneDB ID

Xtr-Mir-140-v1

Family name MIR-140 (all species)
Seed CCACAGG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-140
Paralogues Xtr-Mir-140-v2 
Orthologues Aca-Mir-140-v1  Ami-Mir-140-v1  Bta-Mir-140-v1  Cfa-Mir-140-v1  Cli-Mir-140-v1  Cpi-Mir-140-v1  Cpo-Mir-140-v1  Dno-Mir-140-v1  Dre-Mir-140-v1  Ete-Mir-140-v1  Gga-Mir-140-v1  Hsa-Mir-140-v1  Mdo-Mir-140-v1  Mml-Mir-140-v1  Mmu-Mir-140-v1  Oan-Mir-140-v1  Ocu-Mir-140-v1  Rno-Mir-140-v1  Sha-Mir-140-v1  Sto-Mir-140-v1  Tgu-Mir-140-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro7)
KB021653: 50914954-50915015 [+] UCSC
Clustered MiRNAs
(< 10kb from Mir-140-v1)
Mir-140-v1 KB021653: 50914954-50915015 [+] UCSC
Mir-140-v2 KB021653: 50914954-50915015 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GGCUGCUAUCUCUCCCUCUCUGUGUCCUCCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAGGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUACGGGGAGCUCUCAACAUGGAGCAG
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Structure
        10          20         30        40        50        60
GGCUGCUAUCUCUCCCU--           C-| A             A      GUUACGU 
                   CUCUGUGUCCU  CC GUGGUUUUACCCU UGGUAG       C
                   GGGGCAUAGGA  GG CACCAAGAUGGGA ACCAUC       A
GACGAGGUACAACUCUCGA           CA^ -             C      UUGUCGG 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-140-v1_5p*

MirBase accessionMIMAT0003601
Sequence
0- CAGUGGUUUUACCCUAUGGUAG -22
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Validated targets TargetScanVert: xtr-miR-140
Mature sequence

Xtr-Mir-140-v1_3p

MirBase accessionNone
Sequence
40- ACCACAGGGUAGAACCACGGAC -62
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