| MirGeneDB ID | Xla-Novel-9-P1-v2 |
|---|
| Family name |
XEN-NOVEL-9 (all species) |
|---|
| Seed |
GGGAUCU |
|---|
| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
|---|
| Paralogues |
Xla-Novel-9-P1-v1
Xla-Novel-9-P2-v1
Xla-Novel-9-P2-v2
|
|---|
| Orthologues |
Xtr-Novel-9
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Xenopus
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030734.1: 50543270-50543325 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGACUGGAUCGCCGUUUCUCUGUCUCACACAGGGAUCUCGUGAUGCCGGCAAUGAAAGGCAUGUUCCGGCAUUGCGCAAUCCCAGUGUGAUGCAGGGGAUUUCUACAUGAUGAAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGACUGGAUCGCCGUUU--| C A CU UG CAAUGAA
CUCUGU UCACAC GGGAU CG AUGCCGG A
GGGACG AGUGUG CCCUA GC UACGGCC G
CUAAGUAGUACAUCUUUAG^ U A AC GU UUGUACG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xla-Novel-9-P1-v2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGAUCUCGUGAUGCCGGCAA -22
Get sequence
|
|---|
| Star sequence |
Xla-Novel-9-P1-v2_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- UCCGGCAUUGCGCAAUCCCAGU -56
Get sequence
|
|---|
