| MirGeneDB ID | Xla-Novel-8-P1 |
|---|
| Family name |
XEN-NOVEL-8 (all species) |
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| Seed |
UAGCAAU |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Novel-8-P2
|
|---|
| Orthologues |
Xtr-Novel-8
|
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| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Xenopus
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030729.1: 3253620-3253675 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACAGAAGACGAGUCGUGGGGUAAGACACCGUUAGCAAUGCAUUUACUUCUAUUCACUUGCAAAGAGAAGUGAAUGUGUUGUUAGCUGUGCAUUAGCCAAUCUCUCACUGCAAGGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACAGAAGACGAGUCGUG--| G GA C AUUCAC
GG UAA CAC GUUAGCAAUGCAUUUACUUCU U
CC AUU GUG CGAUUGUUGUGUAAGUGAAGA U
AGGGAACGUCACUCUCUAA^ G AC U GAAACG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Xla-Novel-8-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUAGCAAUGCAUUUACUUCUAU -22
Get sequence
|
|---|
| Star sequence |
Xla-Novel-8-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- AGAAGUGAAUGUGUUGUUAGCU -56
Get sequence
|
|---|
