MirGeneDB 2.1

MirGeneDB ID

Xla-Novel-6-P1

Family name XEN-NOVEL-6 (all species)
Seed CACCGAU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Novel-6-P2 
Orthologues Xtr-Novel-6 
Node of Origin (locus) X. laevis
Node of Origin (family) Xenopus
Genome context
(GCF_001663975.1_XLA_v2)
NC_030740.1: 90284086-90284149 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGGUCUUCCAUCGUGGACUGCCACUUUACCACCGAUAUAUGCACCAAUUAUAGGAUUCAGUAACAUGAUGAUUGGCGCCUAUAUCAGAGGUAAGGUGGCAGUCCUGACAUCAAUCAGCCGUG
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Structure
        10          20        30        40        50        60 
GUUGGUCUUCCAUCGUG--|              ACC      U  A       UAGGAUUC 
                   GACUGCCACUUUACC   GAUAUA GC CCAAUUA        A
                   CUGACGGUGGAAUGG   CUAUAU CG GGUUAGU        G
GUGCCGACUAACUACAGUC^              AGA      C  C       AGUACAAU 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Novel-6-P1_5p

mirBase accessionNone
Sequence
0- CCACCGAUAUAUGCACCAAUUA -22
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Co-mature sequence

Xla-Novel-6-P1_3p

mirBase accessionNone
Sequence
42- AUUGGCGCCUAUAUCAGAGGUA -64
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