MirGeneDB 2.1

MirGeneDB ID

Xla-Novel-5-P1

Family name XEN-NOVEL-5 (all species)
Seed UCCCCUU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Novel-5-P2 
Orthologues Xtr-Novel-5 
Node of Origin (locus) X. laevis
Node of Origin (family) Xenopus
Genome context
(GCF_001663975.1_XLA_v2)
NC_030738.1: 73110560-73110618 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUUUUCUCGAUGCUUGUGUAGUGGUGCGCUCCCCUUUCAUUAGGAGCGUGCUGUACUGUAAUUGGGCACGUCUAAAGGAAGGGAGCACAUCGCUAGUACUAAUCUCAUUGCGUGUUC
Get precursor sequence
Structure
        10         20         30        40        50        60
ACGUUUUCUCGAUGCUU-   -|       C      C    A    GA       GUACU 
                  GUG UAGUGGUG GCUCCC UUUC UUAG  GCGUGCU     G
                  CAU AUCGCUAC CGAGGG AAGG AAUC  UGCACGG     U
CUUGUGCGUUACUCUAAU   G^       A      -    A    --       GUUAA 
       110       100        90         80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Novel-5-P1_5p

mirBase accessionNone
Sequence
0- CUCCCCUUUCAUUAGGAGCGUGCU -24
Get sequence
Star sequence

Xla-Novel-5-P1_3p*

mirBase accessionNone
Sequence
38- CACGUCUAAAGGAAGGGAGCA -59
Get sequence