| MirGeneDB ID | Xla-Novel-4-P1 |
|---|
| Family name |
XEN-NOVEL-4 (all species) |
|---|
| Seed |
CCACUAG |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Novel-4-P2
|
|---|
| Orthologues |
Xtr-Novel-4
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Xenopus
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030736.1: 65242247-65242303 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACUUGCUUACCUCUUGCAGUAACUAAGCUCACCACUAGACGCUGCUGCACUGCAGGCUACAAAUGCUGCAGCGCCACCUGGUGGAGAGUUGAGGCUGCACCAGUUUCAGAGGGAAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACUUGCUUACCUCUUGCA- A- A A A---| U CUGCAG
GUA CU AGCUC CCACUAG CGCUGC GCA G
CGU GA UUGAG GGUGGUC GCGACG CGU C
AAAAGGGAGACUUUGACCA CG G A CACC^ U AAACAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xla-Novel-4-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCACUAGACGCUGCUGCACUGC -23
Get sequence
|
|---|
| Star sequence |
Xla-Novel-4-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- CUGCAGCGCCACCUGGUGGAGA -57
Get sequence
|
|---|
