| MirGeneDB ID | Xla-Novel-18 |
|---|
| Family name |
XLA-NOVEL-18 (all species) |
|---|
| Seed |
CUGACCC |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
X. laevis
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030734.1: 106285682-106285754 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAAAUUAUGUUGUAAUAUUUCUGACCCUGCUGGGGCAAUUGUGAGUCAGAUGAUUAUCAUUGUAAAAUGGUUAAUGCUGUCUCUGACCCGCAAUGGCACCAGUAGGGUCAGAGGAAUUGCAAGCGUUGCCUAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAAAUUAUGUUGUAAUA--| G A A U AUUAUCAUUGUAA
UUUCUGACCCUGCUGG GC AUUGUG GUCAGA G A
GGAGACUGGGAUGACC CG UAACGC CAGUCU C A
UAUCCGUUGCGAACGUUAA^ A G C - UGUCGUAAUUGGU
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Xla-Novel-18_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGGGCAAUUGUGAGUCAGAUG -22
Get sequence
|
|---|
| Mature sequence |
Xla-Novel-18_3p |
| mirBase accession | None |
|---|
| Sequence |
51- UCUGACCCGCAAUGGCACCAGU -73
Get sequence
|
|---|
