| MirGeneDB ID | Xla-Novel-10-P2 |
|---|
| Family name |
XEN-NOVEL-10 (all species) |
|---|
| Seed |
GAUCGGA |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Novel-10-P1
|
|---|
| Orthologues |
Xtr-Novel-10
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Xenopus
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030737.1: 20825694-20825756 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUUACCUAAUCGAUAAGCCAGCAGGCCGAUUGAUCGGAUCUUGUACAAUUUGACCACGCAGGUGGAUGUCCAAAUUGUACUGAUCCCAUCUCUUGGCCUGUGGACCAGACAAUCGGAUUGCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUUACCUAAUCGAUAAG---| G UU C UU ACCACGCA
CCA CAGGCCGA GAU GGAUC GUACAAUUUG G
GGU GUCCGGUU CUA CCUAG CAUGUUAAAC G
AUCGUUAGGCUAACAGACCA^ - CU C U- CUGUAGGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Xla-Novel-10-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAUCGGAUCUUGUACAAUUUGA -23
Get sequence
|
|---|
| Star sequence |
Xla-Novel-10-P2_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
41- AAAUUGUACUGAUCCCAUCUCU -63
Get sequence
|
|---|
