| MirGeneDB ID | Xla-Novel-1-P1 |
|---|
| Family name |
AMP-NOVEL-1 (all species) |
|---|
| Seed |
AUCGCGU |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Novel-1-P2
|
|---|
| Orthologues |
Mun-Novel-1
Xtr-Novel-1
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Amphibia
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030724.1: 71419871-71419928 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GCCAACAACUGUGAUUACUGCUUCACGUUGCAUCGCGUUAACCGGAAGUCUCAUGUAUUAUUGUGGGACUUCUGGGUGACACGACGUGAUGUGAUGUGGCGUCCAUCGAGAAUAGGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCCAACAACUGUGAUUA--|UG U UG A C A AUGUA
C C UCACGU C UCG GUUA CCGGAAGUCUC U
G G AGUGUA G AGC CAGU GGUCUUCAGGG U
AAGGAUAAGAGCUACCUGC^GU U GU C A G UGUUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Xla-Novel-1-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CAUCGCGUUAACCGGAAGUCUC -22
Get sequence
|
|---|
| Star sequence |
Xla-Novel-1-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- GACUUCUGGGUGACACGACGUG -58
Get sequence
|
|---|
