MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-194-P2c

Family name MIR-194 (all species)
Seed GUAACAG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-194-2
Paralogues Xla-Mir-194-P1a  Xla-Mir-194-P1b  Xla-Mir-194-P2d 
Orthologues Aca-Mir-194-P2  Ami-Mir-194-P2  Bta-Mir-194-P2  Cfa-Mir-194-P2  Cpi-Mir-194-P2  Cpo-Mir-194-P2  Dno-Mir-194-P2  Ete-Mir-194-P2  Gja-Mir-194-P2  Hsa-Mir-194-P2  Lch-Mir-194-P2  Loc-Mir-194-P2  Mml-Mir-194-P2  Mmu-Mir-194-P2  Mun-Mir-194-P2  Oan-Mir-194-P2  Ocu-Mir-194-P2  Pbv-Mir-194-P2  Rno-Mir-194-P2  Sha-Mir-194-P2  Spt-Mir-194-P2  Sto-Mir-194-P2  Xtr-Mir-194-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030730.1: 23104037-23104095 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P2c)		 Mir-194-P2c NC_030730.1: 23104037-23104095 [+] UCSC Ensembl
Mir-192-P2c NC_030730.1: 23107083-23107143 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACCUCAUGGAGACACUGAUGGUCAUCACUUGUAACAGCAACUCCAUGUGGAAGUAGAUAUAAUAUUCCGGUGGAGAUGCUGUUAUCUGUAAUGUGCAUCUUAUUCUUCAAGUGAUAUU
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Structure
        10          20        30        40        50         
AACCUCAUGGAGACACU--|   GU   C  UU         A      G     GUAGA 
                   GAUG  CAU AC  GUAACAGCA CUCCAU UGGAA     U
                   CUAC  GUA UG  UAUUGUCGU GAGGUG GCCUU     A
UUAUAGUGAACUUCUUAUU^   GU   A  UC         A      -     AUAAU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-194-P2c_5p
mirBase accessionMIMAT0046508
Sequence 
0- UGUAACAGCAACUCCAUGUGGAA -23
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Star sequence

Xla-Mir-194-P2c_3p* (predicted)
mirBase accessionMIMAT0046509
Sequence 
37- CCGGUGGAGAUGCUGUUAUCUG -59
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