MirGeneDB ID | Xla-Mir-194-P1b |
Family name |
MIR-194 (all species) |
Seed |
GUAACAG |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-194-P1a
Xla-Mir-194-P2c
Xla-Mir-194-P2d
|
Orthologues |
Aca-Mir-194-P1
Ami-Mir-194-P1
Bta-Mir-194-P1
Cfa-Mir-194-P1
Cli-Mir-194-P1
Cmi-Mir-194-P1
Cpi-Mir-194-P1
Ebu-Mir-194-o1
Ete-Mir-194-P1
Gga-Mir-194-P1
Gja-Mir-194-P1
Hsa-Mir-194-P1
Lch-Mir-194-P1
Mml-Mir-194-P1
Mmu-Mir-194-P1
Mun-Mir-194-P1
Oan-Mir-194-P1
Ocu-Mir-194-P1
Pbv-Mir-194-P1
Pma-Mir-194-o1
Rno-Mir-194-P1
Spt-Mir-194-P1
Sto-Mir-194-P1
Tgu-Mir-194-P1
Xtr-Mir-194-P1
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030733.1: 14167694-14167749 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAGUAGAAGAGCCUGUAGUGUGUAUCAGGUGUAACAGCAACUCCAUGUGGACUUGUCCGUAUUCCAGUGGAGAUGCUGUUACUUUUGAUGGGCACUUACUGACCAGUGACAAGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAGUAGAAGAGCCUGU--| G U A G CUUGU
AGUGU UAUCAGG GUAACAGCA CUCCAU UGGA \
UCACG GUAGUUU CAUUGUCGU GAGGUG ACCU C
GAGAACAGUGACCAGUCAU^ G U A - UAUGC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Xla-Mir-194-P1b_5p |
mirBase accession | None |
Sequence |
0- UGUAACAGCAACUCCAUGUGGA -22
Get sequence
|
Star sequence |
Xla-Mir-194-P1b_3p* |
mirBase accession | None |
Sequence |
35- CAGUGGAGAUGCUGUUACUUU -56
Get sequence
|