MirGeneDB 2.1

MirGeneDB ID

Xbo-Mir-252-P2g

Family name MIR-252 (all species)
Seed UAAGUAC
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i  Xbo-Mir-252-P2h 
Orthologues Aae-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Cgi-Mir-252-P2  Csc-Mir-252-P2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dma-Mir-252-P2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Hme-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Npo-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Sko-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2 
Node of Origin (locus) X. bocki
Node of Origin (family) Bilateria
Genome context
(Xbocki_plus)
3C-assembly_contig_1901: 5656186-5656240 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCACUGCAUGCAGUUUUAGCUGACUCAAUUCUAAGUACUAGAGCCGUAGGUGGUCAUAAGUCACCUACUACGCUAGUGCUUAAAAUGGUGUUGGUGUCUAUCAUCGCGCAACGUC
Get precursor sequence
Structure
        10          20        30        40        50       
UCACUGCAUGCAGUUUUA--| UG  UCA   C          AGCC       GUCA 
                    GC  AC   AUU UAAGUACUAG    GUAGGUG    \
                    UG  UG   UAA AUUCGUGAUC    CAUCCAC    U
CUGCAACGCGCUACUAUCUG^ GU  UGG   A          GCAU       UGAA 
   110       100        90        80        70        60
Deep sequencing
Go to detailed chart
Commentcoupled with Mir-2001
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To To To
Mature sequence

Xbo-Mir-252-P2g_5p

mirBase accessionNone
Sequence
0- CUAAGUACUAGAGCCGUAGGUG -22
Get sequence
Star sequence

Xbo-Mir-252-P2g_3p*

mirBase accessionNone
Sequence
33- CCUACUACGCUAGUGCUUAAAA -55
Get sequence