MirGeneDB ID | Xbo-Mir-252-P2g |
Family name |
MIR-252 (all species) |
Seed |
UAAGUAC |
Species |
Xenoturbella (Xenoturbella bocki) |
MiRBase ID |
|
Paralogues |
Xbo-Mir-252-P1g
Xbo-Mir-252-P1h
Xbo-Mir-252-P1i
Xbo-Mir-252-P2h
|
Orthologues |
Aae-Mir-252-P2
Bfl-Mir-252-P2
Bge-Mir-252-P2-v1
Bge-Mir-252-P2-v2
Bla-Mir-252-P2
Cbr-Mir-252-P2
Cel-Mir-252-P2
Cgi-Mir-252-P2
Csc-Mir-252-P2
Cte-Mir-252-P2
Dan-Mir-252-P2-v1
Dan-Mir-252-P2-v2
Dma-Mir-252-P2
Dme-Mir-252-P2-v1
Dme-Mir-252-P2-v2
Dmo-Mir-252-P2-v1
Dmo-Mir-252-P2-v2
Dpu-Mir-252-P2-v1
Dpu-Mir-252-P2-v2
Dsi-Mir-252-P2-v1
Dsi-Mir-252-P2-v2
Dya-Mir-252-P2-v1
Dya-Mir-252-P2-v2
Hme-Mir-252-P2
Isc-Mir-252-P2-v1
Isc-Mir-252-P2-v2
Lan-Mir-252-P2
Lgi-Mir-252-P2
Npo-Mir-252-P2
Pfl-Mir-252-P2
Pmi-Mir-252-P2
Sko-Mir-252-P2
Spu-Mir-252-P2
Tca-Mir-252-P2
|
Node of Origin (locus) |
X. bocki
|
Node of Origin (family) |
Bilateria
|
Genome context (Xbocki_plus) |
3C-assembly_contig_1901: 5656186-5656240 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCACUGCAUGCAGUUUUAGCUGACUCAAUUCUAAGUACUAGAGCCGUAGGUGGUCAUAAGUCACCUACUACGCUAGUGCUUAAAAUGGUGUUGGUGUCUAUCAUCGCGCAACGUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCACUGCAUGCAGUUUUA--| UG UCA C AGCC GUCA
GC AC AUU UAAGUACUAG GUAGGUG \
UG UG UAA AUUCGUGAUC CAUCCAC U
CUGCAACGCGCUACUAUCUG^ GU UGG A GCAU UGAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | coupled with Mir-2001 |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xbo-Mir-252-P2g_5p |
mirBase accession | None |
Sequence |
0- CUAAGUACUAGAGCCGUAGGUG -22
Get sequence
|
Star sequence |
Xbo-Mir-252-P2g_3p* |
mirBase accession | None |
Sequence |
33- CCUACUACGCUAGUGCUUAAAA -55
Get sequence
|