MirGeneDB ID | Xbo-Mir-210-P18 |
Family name |
MIR-210 (all species) |
Seed |
UGUGCGU |
Species |
Xenoturbella (Xenoturbella bocki) |
MiRBase ID |
|
Paralogues |
Xbo-Mir-210-P17
|
Orthologues |
Aca-Mir-210
Ami-Mir-210
Bfl-Mir-210
Bla-Mir-210
Bta-Mir-210
Cfa-Mir-210
Cgi-Mir-210
Cli-Mir-210
Cmi-Mir-210
Cpi-Mir-210
Cpo-Mir-210
Dma-Mir-210
Dno-Mir-210
Dpu-Mir-210
Dre-Mir-210
Ebu-Mir-210
Efe-Mir-210
Ete-Mir-210
Gga-Mir-210
Gja-Mir-210
Gmo-Mir-210
Hsa-Mir-210
Isc-Mir-210
Lan-Mir-210
Lch-Mir-210
Lgi-Mir-210
Loc-Mir-210
Mal-Mir-210
Mdo-Mir-210
Mml-Mir-210
Mmu-Mir-210
Mun-Mir-210
Npo-Mir-210
Oan-Mir-210
Ocu-Mir-210
Pbv-Mir-210
Pma-Mir-210
Rno-Mir-210
Sha-Mir-210
Sko-Mir-210
Sme-Mir-210-P18
Spt-Mir-210
Tgu-Mir-210
Tni-Mir-210
Xtr-Mir-210
|
Node of Origin (locus) |
X. bocki
|
Node of Origin (family) |
Bilateria
|
Genome context (Xbocki_plus) |
3C-assembly_contig_1891: 2632800-2632860 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGAUGUGGGGGUGGCUGGUGUCGCCCGGCCGGCGCUGUGACUCUGCACAGAGCGCCCAUUGCGUGCCUUUGUGCGUGUGACAGCGGCGGUCGGAGAACAUCUCCGUGACGUCACAGAGGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUGAUGUGGGGGUGGCU-- -| GC G G UC CGCCCA
GGUG UC CCGGCCG CGCUGU AC UGCACAGAG U
CUAC AG GGCUGGC GCGACA UG GCGUGUUUC U
AGGAGACACUGCAGUGCCU A^ A- G G U- CGUGCG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Xbo-Mir-210-P18_5p* |
mirBase accession | None |
Sequence |
0- CGGCGCUGUGACUCUGCACAGAG -23
Get sequence
|
Mature sequence |
Xbo-Mir-210-P18_3p |
mirBase accession | None |
Sequence |
39- UUGUGCGUGUGACAGCGGCGGU -61
Get sequence
|