Mir-210-P17

MirGeneDB ID

Xbo-Mir-210-P17

Family name

MIR-210 (all species)

Seed

GUGGCUU

Species

Xenoturbella (Xenoturbella bocki)

MiRBase ID

Paralogues

Xbo-Mir-210-P18

Orthologues

Aca-Mir-210 Ami-Mir-210 Bfl-Mir-210 Bla-Mir-210 Bta-Mir-210 Cfa-Mir-210 Cgi-Mir-210 Cli-Mir-210 Cmi-Mir-210 Cpi-Mir-210 Cpo-Mir-210 Dma-Mir-210 Dno-Mir-210 Dpu-Mir-210 Dre-Mir-210 Ebu-Mir-210 Efe-Mir-210 Ete-Mir-210 Gga-Mir-210 Gja-Mir-210 Gmo-Mir-210 Hsa-Mir-210 Isc-Mir-210 Lan-Mir-210 Lch-Mir-210 Lgi-Mir-210 Loc-Mir-210 Mal-Mir-210 Mdo-Mir-210 Mml-Mir-210 Mmu-Mir-210 Mun-Mir-210 Npo-Mir-210 Oan-Mir-210 Ocu-Mir-210 Pbv-Mir-210 Pma-Mir-210 Rno-Mir-210 Sha-Mir-210 Sko-Mir-210 Sme-Mir-210-P17 Spt-Mir-210 Tgu-Mir-210 Tni-Mir-210 Xtr-Mir-210

Node of Origin (locus)

X. bocki

Node of Origin (family)

Bilateria

Genome context
(Xbocki_plus)

3C-assembly_contig_1891: 2632638-2632700 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGUGUAUUUGUAUUGUGGCGUGUAUUUUGCGUGGCUUUGUGACGCAUCCAAGUGUAGAAUUGACGUCGACUUGUGCGUUGCACAGUUACGAGAAAUACUCGCGAGCCAACGCCCCUAAAAAC

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Structure

        10          20        30        40        50        60  
AUGUGUAUUUGUAUUGUG--|  U      UG       U  UG     UC     GUAGAAU 
                    GCG GUAUUU  CGUGGCU UG  ACGCA  CAAGU       \
                    CGC CAUAAA  GCAUUGA AC  UGCGU  GUUCA       U
CAAAAAUCCCCGCAACCGAG^  U      GA       C  GU     --     GCUGCAG 
 120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To	To	To

Mature sequence

Xbo-Mir-210-P17_5p

mirBase accession

None

Sequence

0- CGUGGCUUUGUGACGCAUCCAAGU -24

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Star sequence

Xbo-Mir-210-P17_3p*

mirBase accession

None

Sequence

41- UUGUGCGUUGCACAGUUACGAG -63

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