MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-279-o21

Family name MIR-279 (all species)
Seed GACUAGA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-279a
Paralogues Tca-Mir-279-o22  Tca-Mir-279-o23  Tca-Mir-279-o24  Tca-Mir-279-o25 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) T. castaneum
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)
LG7: 8213635-8213695 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-o21)
Mir-279-o24 LG7: 8213507-8213566 [-] Ensembl
Mir-279-o21 LG7: 8213635-8213695 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCUGUAGACGAUAAUUUGAUCCGUUCUUGAUGGGUUCGGGUCUAGUGGCACGGUUUUUUCAACUUCGUGACUAGAUCCACACUCAUUAAGGAAGUUUCACACCACAACAAAAGAAUUAC
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Structure
        10          20        30        40        50        60 
UUUCUGUAGACGAUAAUU--|  UCCG            UC         GG    GUUUUU 
                    UGA    UUCUUGAUGGGU  GGGUCUAGU  CACG      \
                    ACU    AGGAAUUACUCA  CCUAGAUCA  GUGC      U
CAUUAAGAAAACAACACCAC^  UUGA            CA         --    UUCAAC 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-279-o21_5p*

mirBase accessionMIMAT0019125
Sequence
0- GAUGGGUUCGGGUCUAGUGGCACG -24
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Mature sequence

Tca-Mir-279-o21_3p

mirBase accessionMIMAT0008383
Sequence
39- UGACUAGAUCCACACUCAUUAA -61
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