MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-2-P10a

Family name MIR-2 (all species)
Seed AUCACAG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-2944a
Paralogues Tca-Mir-2-P1-v1  Tca-Mir-2-P1-v2  Tca-Mir-2-P2e  Tca-Mir-2-P2f  Tca-Mir-2-P3-v1  Tca-Mir-2-P3-v2  Tca-Mir-2-P4-v1  Tca-Mir-2-P4-v2  Tca-Mir-2-P7  Tca-Mir-2-P8  Tca-Mir-2-P10b  Tca-Mir-2-P10c 
Orthologues Asu-Mir-2-o10 
Node of Origin (locus) T. castaneum
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)
LG3: 15689938-15689994 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P10a)
Mir-3841 LG3: 15689576-15689634 [+] Ensembl
Mir-3840 LG3: 15689698-15689754 [+] Ensembl
Mir-9-o8 LG3: 15689817-15689876 [+] Ensembl
Mir-2-P10a LG3: 15689938-15689994 [+] Ensembl
Mir-279-o23 LG3: 15690069-15690126 [+] Ensembl
Mir-3843 LG3: 15690171-15690228 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUGUGUUUUCACAACUCGCUGAAACUGUGGAGGAACUAUUGGUGUGAUUUGUUCAUUUAAUCAUAUCACAGCCAUUAGUUACUUCACAGUUUCAGUAUUUUCUACACUGGAGUUAG
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Structure
        10          20        30        40         50       
GAUGUGUUUUCACAACUC--               G     U   -|     U  UUCA 
                    GCUGAAACUGUGGAG AACUA UGG UGUGAU UG    U
                    UGACUUUGACACUUC UUGAU ACC ACACUA AC    U
GAUUGAGGUCACAUCUUUUA               A     U   G^     U  UAAU 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-2-P10a_5p*

mirBase accessionMIMAT0018718
Sequence
0- GAGGAACUAUUGGUGUGAUUUG -22
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Mature sequence

Tca-Mir-2-P10a_3p

mirBase accessionMIMAT0018719
Sequence
34- UAUCACAGCCAUUAGUUACUUCA -57
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