MirGeneDB ID | Sto-Mir-30-P2c |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-30-P1b
Sto-Mir-30-P1c
Sto-Mir-30-P1d
Sto-Mir-30-P2a
Sto-Mir-30-P2b
|
Orthologues |
Aca-Mir-30-P2c
Ami-Mir-30-P2c
Bta-Mir-30-P2c
Cfa-Mir-30-P2c
Cpi-Mir-30-P2c
Cpo-Mir-30-P2c
Dno-Mir-30-P2c
Dre-Mir-30-P2c
Ete-Mir-30-P2c
Gga-Mir-30-P2c
Hsa-Mir-30-P2c
Mdo-Mir-30-P2c
Mml-Mir-30-P2c
Mmu-Mir-30-P2c
Oan-Mir-30-P2c
Ocu-Mir-30-P2c
Rno-Mir-30-P2c
Sha-Mir-30-P2c
Tgu-Mir-30-P2c
Xtr-Mir-30-P2c
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (miRNA_loci_genome) |
BFAA01001400.1: 433282-433340 [+]
|
Precursor (pre-Mir +30nt flank) |
CUUGACCGUGUGCAACUGAGCUCCAGGCACUGUAAACAUCCUACACUCAGCUGUAACAUAAAAGAGGCUGAGAGAAGGUUGUUUACUUUAACUGGCUUGGAACAGCAACUUUUUAAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUGACCGUGUGCAACUGAGC ACU-----| U ACA GUAACA
UCCAGGC GUAAACA CCU CUCAGCU \
AGGUUCG CAUUUGU GGA GAGUCGG U
UAAAAUUUUUCAACGACA--- GUCAAUUU^ U AGA AGAAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Sto-Mir-30-P2c_5p |
MirBase accession | None |
Sequence |
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
|
Star sequence |
Sto-Mir-30-P2c_3p* |
MirBase accession | None |
Sequence |
37- CUGAGAGAAGGUUGUUUACUUU -59
Get sequence
|