MirGeneDB ID | Sto-Mir-30-P1d |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-30-P1b
Sto-Mir-30-P1c
Sto-Mir-30-P2a
Sto-Mir-30-P2b
Sto-Mir-30-P2c
|
Orthologues |
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (miRNA_loci_genome) |
BFAA01005240.1: 134438-134501 [-]
|
Precursor (pre-Mir +30nt flank) |
UUAUUCAGUUAUGCUCUGGUGCAGCGGUCAUGUAAACAUCUUUAACUGAAAGCUUUACGUACUAAAUAACGGCUUUCAGUUGGAUGUUUAUGUUACCUUGUCACUAAAAAUCUCUGAAUUUCCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUAUUCAGUUAUGCUCU-- -| C C UU UUACGUA
GGUG CAG GGU AUGUAAACAUCU AACUGAAAGCU C
UCAC GUU CCA UGUAUUUGUAGG UUGACUUUCGG U
UCCUUUAAGUCUCUAAAAA U^ - U -- CAAUAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Sto-Mir-30-P1d_5p |
MirBase accession | None |
Sequence |
0- UGUAAACAUCUUUAACUGAAAGCU -24
Get sequence
|
Star sequence |
Sto-Mir-30-P1d_3p* |
MirBase accession | None |
Sequence |
42- CUUUCAGUUGGAUGUUUAUGUU -64
Get sequence
|