MirGeneDB ID | Sto-Mir-29-P2a |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-29-P1a
Sto-Mir-29-P1b
Sto-Mir-29-P2b
|
Orthologues |
Aae-Mir-29-P2
Aca-Mir-29-P2a
Ami-Mir-29-P2a-v1
Ami-Mir-29-P2a-v2
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bta-Mir-29-P2a
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cfa-Mir-29-P2a
Cgi-Mir-29-P2
Cli-Mir-29-P2a
Cpi-Mir-29-P2a
Cpo-Mir-29-P2a
Cte-Mir-29-P2
Dan-Mir-29-P2
Dme-Mir-29-P2
Dmo-Mir-29-P2
Dno-Mir-29-P2a
Dre-Mir-29-P2a
Ete-Mir-29-P2a
Gga-Mir-29-P2a
Hme-Mir-29-P2
Hsa-Mir-29-P2a
Mdo-Mir-29-P2a
Mml-Mir-29-P2a
Mmu-Mir-29-P2a
Oan-Mir-29-P2a
Ocu-Mir-29-P2a
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Rno-Mir-29-P2a
Sha-Mir-29-P2a
Sko-Mir-29-P2
Spu-Mir-29-P2
Tca-Mir-29-P2
Tgu-Mir-29-P2a
Xtr-Mir-29-P2a
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (miRNA_loci_genome) |
BFAA01004289.1: 36703-36764 [-]
|
Precursor (pre-Mir +30nt flank) |
UGAAGAAGGCGGUGUAACUUCUCCAGGAGCCUGGUUCCAUAUGGUGGUUUAGAUUUAACUGAGCUGUGUCUAGCACCAUUUGAAAUCAGUGUUCUUGGAGAAAGGCUCGCAUCACAACUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGAAGAAGGCGGUGUAAC-- -| C U GU UUUAACU
UUCUCCAGGAGC CUGGUU CA AUGGUG UUAGA \
AAGAGGUUCUUG GACUAA GU UACCAC GAUCU G
CUCUCAACACUACGCUCGGA U^ A U -- GUGUCGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sto-Mir-29-P2a_5p* |
MirBase accession | None |
Sequence |
0- CUGGUUCCAUAUGGUGGUUUAGA -23
Get sequence
|
Mature sequence |
Sto-Mir-29-P2a_3p |
MirBase accession | None |
Sequence |
40- UAGCACCAUUUGAAAUCAGUGU -62
Get sequence
|