MirGeneDB ID | Sto-Mir-221-P1b |
Family name |
MIR-221 (all species) |
Seed |
GCUACAU |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-221-P1a
Sto-Mir-221-P2a
|
Orthologues |
Aca-Mir-221-P1b
Ami-Mir-221-P1b
Cli-Mir-221-P1b
Cmi-Mir-221-P1b
Cpi-Mir-221-P1b
Dre-Mir-221-P1b
Gga-Mir-221-P1b
Gja-Mir-221-P1b
Lch-Mir-221-P1b
Loc-Mir-221-P1b
Mun-Mir-221-P1b
Oan-Mir-221-P1b
Pbv-Mir-221-P1b
Spt-Mir-221-P1b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01003200.1: 196698-196761 [-]
|
Precursor (pre-Mir +30nt flank) |
CUAAAUGCUGGAUAAAAGAUGUUAAUCAGUUGCUCAGUAGCUAGUGUAGGAUCUGUUCCACAAUUACUACAGCUACAUCUGGUUACUGGGUCUCUGAUGACAUUAUCAAGCUACAAAGAUUGUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUAAAUGCUGGAUAAAA---| A UU - GAU UUCCAC
GAUGUUA UCAG GCUCAGUAGCUAG UGUAG CUG A
UUACAGU AGUC UGGGUCAUUGGUC ACAUC GAC A
UUGUUAGAAACAUCGAACUA^ - UC U --- AUCAUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sto-Mir-221-P1b_5p* |
mirBase accession | None |
Sequence |
0- UGCUCAGUAGCUAGUGUAGGAUCUG -25
Get sequence
|
Mature sequence |
Sto-Mir-221-P1b_3p |
mirBase accession | None |
Sequence |
40- AGCUACAUCUGGUUACUGGGUCUC -64
Get sequence
|